Category: Survey

• November 2024 [WIP] Minimizers and more
  survey minimizers wip
• October 2024 FM-index implementations
  survey
• September 2024 PACE 24
  survey ilp
• June 2024 CPU performance
  survey highlight hpc wip
• June 2024 Tools for suffix array searching
  survey note suffix-array search-index
• June 2024 Crates for suffix array construction
  survey note suffix-array
• January 2024 Mod-minimizers and other minimizers
  ideas survey lablog highlight minimizers
• August 2023 [WIP] Bitpacking and string searching
  survey alignment wip
• July 2023 Shortest paths, bucket queues, and A* on the edit graph
  survey astar pairwise-alignment
• November 2022 The complexity and performance of WFA and band doubling
  survey pairwise-alignment wfa
• July 2022 Bidirectional A*
  survey note astar
• June 2022 A* variants
  survey astar
• April 2022 A survey of exact global pairwise alignment
  survey highlight pairwise-alignment
• July 2021 Spaced k-mer and assembler methods
  survey note genome-assembly spaced-kmers