DSB 2023 20 March 2023 2-minute readThese are notes for DSB 2023.Day 1, Tuesday Practical data structures for longest common extensions, Alexander Herlez notes go herePan-genome de Bruijn graph using the bidirectional FM-index, Lore Depuydt Indexing large metagenomics projects with abundances, Pierre Peterlongo µ-PBWT: Enabling the Storage and Use of UK Biobank Data on a Commodity Laptop, Davide Cozzi Genome-on-Diet: Taming Large-Scale Genomic Analyses via Sparsified Genomics, Mohammed Alser Spectrum preserving tilings enable sparse and modular reference indexing, Giulio Ermanno Pibiri Towards a lower-memory chunked graph data structure inspired by Minecraft, Fawaz Dabbaghie Optimal Worst-Case Design of Gapped k-mer Masks, Sven Rahmann Locality-Preserving Hashing of k-mers, Yoshihiro Shibuya Space-efficient k-mer counting using an implicit sequence representation, Miika Leinonen VeChat: correcting errors in long reads using variation graphs, Alexander Schönhuth Fixing homopolymer errors in HiFi reads using dictionary compression, Diego Diaz-Dominguez Orthanq: orthogonal evidence based haplotype quantification, Hamdiye Uzuner Day 2, Wednesday Random Wheeler graphs, Riccardo Maso The Graph Wheelerization Problem, Davide Tonetto Sorting Wheeler NFA’s using relational partition refinement, Bojana Kodric Prefix-sorting strings on deterministic finite automata, Sung-Hwan Kim MARIA: Multiple alignment r-index with aggregation, Adrián Goga Approximate pattern matching using search schemes and in-text verification, Luca Renders Chaining of maximal exact matches in graphs, Nicola Rizzo RecGraph: recombination-aware alignment of sequences to variation graphs, Jorge Avila Cartes Exact string alignments to (E)D-texts, Nadia Pisanti Periodicity of degenerate strings, Pengfei Wang Deriving polygenic risk score using non-negative matrix factorization, Vu Lam Dang Identifying antimicrobial resistance gene transfer between plasmids, Marco Teixeira