There are links for the RECOMB-Seq poster on PA-Bench.
References
Daily, Jeff. 2016. “Parasail: Simd c Library for Global, Semi-Global, and Local Pairwise Sequence Alignments.” Bmc Bioinformatics 17 (1). https://doi.org/10.1186/s12859-016-0930-z.
Groot Koerkamp, Ragnar. 2024. “A*PA2: Up to 20 Times Faster Exact Global Alignment,” March. https://doi.org/10.1101/2024.03.24.586481.
Groot Koerkamp, Ragnar, and Pesho Ivanov. 2024. “Exact Global Alignment Using A* with Chaining Seed Heuristic and Match Pruning.” Edited by Tobias Marschall. Bioinformatics 40 (3). https://doi.org/10.1093/bioinformatics/btae032.
Li, Heng. 2018. “Minimap2: Pairwise Alignment for Nucleotide Sequences.” Edited by Inanc Birol. Bioinformatics 34 (18): 3094–3100. https://doi.org/10.1093/bioinformatics/bty191.
Liu, Daniel, and Martin Steinegger. 2023. “Block Aligner: an adaptive SIMD-accelerated aligner for sequences and position-specific scoring matrices.” Bioinformatics, btad487. https://doi.org/10.1093/bioinformatics/btad487.
Marco-Sola, Santiago, Jordan M Eizenga, Andrea Guarracino, Benedict Paten, Erik Garrison, and Miquel Moreto. 2023. “Optimal Gap-Affine Alignment in O(s) Space.” Edited by Pier Luigi Martelli. Bioinformatics 39 (2). https://doi.org/10.1093/bioinformatics/btad074.
Marco-Sola, Santiago, Juan Carlos Moure, Miquel Moreto, and Antonio Espinosa. 2020. “Fast gap-affine pairwise alignment using the wavefront algorithm.” Bioinformatics 37 (4): 456–63. https://doi.org/10.1093/bioinformatics/btaa777.
Suzuki, Hajime, and Masahiro Kasahara. 2018. “Introducing Difference Recurrence Relations for Faster Semi-Global Alignment of Long Sequences.” BMC Bioinformatics 19 (S1). https://doi.org/10.1186/s12859-018-2014-8.
Šošić, Martin, and Mile Šikić. 2017. “Edlib: A c/c++ Library for Fast, Exact Sequence Alignment Using Edit Distance.” Edited by John Hancock. Bioinformatics 33 (9): 1394–95. https://doi.org/10.1093/bioinformatics/btw753.