Tag: Note

• June 2024 Tools for suffix array searching
  survey note suffix-array search-index
• June 2024 Crates for suffix array construction
  survey note suffix-array
• January 2024 Notes on SsHash
  method note mphf
• November 2023 Notes on writing course
  misc note
• September 2023 BBHash: some ideas
  method note mphf
• September 2023 BitPAl bitpacking algorithm
  method note pairwise-alignment bitpacking
• November 2022 Thoughts on linear programming
  ideas note
• October 2022 A Combinatorial Identity
  misc note math
• October 2022 Linear-time suffix array construction
  method note suffix-array
• September 2022 Reducing A* memory usage using fronts
  ideas note astar
• July 2022 Bidirectional A*
  survey note astar
• July 2022 The BiWFA meeting condition
  ideas note pairwise-alignment wfa
• April 2022 Benchmark attention points
  devops note hpc
• April 2022 Proof sketch for linear time seed heuristic alignment
  ideas note pairwise-alignment
• November 2021 AStarix
  method note alignment astar
• November 2021 Neighbour joining
  method note phylogeny
• October 2021 UPGMA
  method note phylogeny
• July 2021 Spaced k-mer and assembler methods
  survey note genome-assembly spaced-kmers