Tag: Pairwise-Alignment

• March 2024 A*PA2: Up to 19x faster exact global alignment
  paper highlight pairwise-alignment astar hpc
• December 2023 A*PA talk @ CWI
  misc pairwise-alignment teaching
• September 2023 BitPAl bitpacking algorithm
  method note pairwise-alignment bitpacking
• July 2023 Shortest paths, bucket queues, and A* on the edit graph
  survey astar pairwise-alignment
• November 2022 The complexity and performance of WFA and band doubling
  survey pairwise-alignment wfa
• October 2022 Local Doubling
  ideas pairwise-alignment
• September 2022 Competitive Programming Lecture
  misc pairwise-alignment competitive-programming teaching
• September 2022 Speeding up A*: computational volumes and path-pruning
  ideas pairwise-alignment astar
• August 2022 Linear memory WFA?
  ideas pairwise-alignment wfa
• August 2022 Transforming match bonus into cost
  ideas pairwise-alignment wfa
• August 2022 Diamond optimisation for diagonal transition
  ideas pairwise-alignment hpc
• July 2022 The BiWFA meeting condition
  ideas note pairwise-alignment wfa
• April 2022 Proof sketch for linear time seed heuristic alignment
  ideas note pairwise-alignment
• April 2022 Variations on the WFA recursion
  ideas pairwise-alignment wfa
• April 2022 A survey of exact global pairwise alignment
  survey highlight pairwise-alignment