Tag: Pairwise-Alignment

March 2025 Path Pruning Revisited
pairwise-alignment note
March 2025 Beyond Global Alignment
thesis pairwise-alignment
February 2025 A History of Pairwise Alignment
thesis survey pairwise-alignment highlight
March 2024 A*PA2: Up to 19x faster exact global alignment
paper highlight pairwise-alignment astar hpc software
December 2023 A*PA talk @ CWI
misc pairwise-alignment teaching
September 2023 BitPAl bitpacking algorithm
method note pairwise-alignment bitpacking
July 2023 Shortest paths, bucket queues, and A* on the edit graph
survey astar pairwise-alignment
November 2022 The complexity and performance of WFA and band doubling
survey pairwise-alignment wfa
October 2022 Local Doubling
ideas pairwise-alignment
September 2022 Competitive Programming Lecture
misc pairwise-alignment competitive-programming teaching
September 2022 Speeding up A*: computational volumes and path-pruning
ideas pairwise-alignment astar
August 2022 Linear memory WFA?
ideas pairwise-alignment wfa
August 2022 Transforming match bonus into cost
ideas pairwise-alignment wfa
August 2022 Diamond optimisation for diagonal transition
ideas pairwise-alignment hpc
July 2022 The BiWFA meeting condition
ideas note pairwise-alignment wfa
April 2022 Proof sketch for linear time seed heuristic alignment
ideas note pairwise-alignment
April 2022 Variations on the WFA recursion
ideas pairwise-alignment wfa
April 2022 A survey of exact global pairwise alignment
survey pairwise-alignment